Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lingo3Leucine rich repeat and Ig domain containing 3a. (609 aa)    
Predicted Functional Partners:
LOC101167215
Family with sequence similarity 151 member B.
    
 
 0.836
ddx59
DEAD (Asp-Glu-Ala-Asp) box polypeptide 59.
    
 0.687
oaz1
Ornithine decarboxylase antizyme 1a.
      
 0.650
c11h1orf109
C19h1orf109 homolog (H. sapiens).
   
    0.608
cwc25
CWC25 spliceosome associated protein homolog.
   
 
 0.586
dot1l
Histone-lysine N-methyltransferase, H3 lysine-79 specific.
      
 0.532
LOC101175409
Limb and CNS expressed 1.
   
    0.529
LIX1L
Limb and CNS expressed 1 like.
   
    0.529
fbxo47
F-box domain-containing protein.
   
    0.515
kif14
Kinesin family member 14; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
   
 
 0.513
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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