STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101162380Homeobox A13a. (299 aa)    
Predicted Functional Partners:
MCOLN3
PKD_channel domain-containing protein.
      
 0.506
TNFRSF11B
TNF receptor superfamily member 11b.
      
 0.489
hspg2
Heparan sulfate proteoglycan 2.
      
 0.489
CDH7
Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.
      
 0.489
LOC101163014
3-hydroxyisobutyrate dehydrogenase; Belongs to the HIBADH-related family.
      
 0.475
gja5
Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.
      
 0.430
LOC101158794-2
Homeobox A10b.
   
  
0.420
hoxA2a
HoxA2a.
  
 
 
0.419
LOC101160743
Homeobox A1a.
    
 
0.410
RAB38
RAB38, member RAS oncogene family.
   
  
 0.409
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.