Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lrfn1Leucine rich repeat and fibronectin type III domain containing 1. (754 aa)    
Predicted Functional Partners:
kbtbd3
Kelch repeat and BTB (POZ) domain containing 3.
     
 0.645
dlg3
Discs, large homolog 3 (Drosophila); Belongs to the MAGUK family.
    
 0.573
LOC101159214
Discs, large homolog 4a (Drosophila); Belongs to the MAGUK family.
    
 0.573
LOC101156681
Discs, large (Drosophila) homolog 1, like; Belongs to the MAGUK family.
    
 0.573
LOC101168565
Discs, large homolog 2 (Drosophila); Belongs to the MAGUK family.
    
 0.573
LOC101171070
Uncharacterized protein; Belongs to the MAGUK family.
    
 0.573
ppp1r9a
Protein phosphatase 1, regulatory subunit 9A.
    
 
 0.536
LOC101157661
Leucine rich repeat and fibronectin type III domain containing 2b.
     
  0.497
LRFN2
Leucine rich repeat and fibronectin type III domain containing 2.
     
  0.497
LOC105356388
Leucine rich repeat and fibronectin type III domain containing 4b.
     
  0.480
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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