Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC101160421CCR4-NOT transcription complex, subunit 6a. (559 aa)    
Predicted Functional Partners:
cnot1
CCR4-NOT transcription complex, subunit 1.
   
 0.967
cnot11
CCR4-NOT transcription complex, subunit 11.
    
 0.948
LOC101165240
CCR4-NOT transcription complex, subunit 7.
   
 0.932
cnot10
CCR4-NOT transcription complex, subunit 10.
    
 0.932
cnot8
CCR4-NOT transcription complex, subunit 8.
   
 0.928
cnot4
CCR4-NOT transcription complex, subunit 4a.
    
 0.911
LOC101162525
CCR4-NOT transcription complex, subunit 2.
    
 0.907
CNOT2
NOT2_3_5 domain-containing protein.
    
 0.907
cnot6l
CCR4-NOT transcription complex, subunit 6-like.
  
  
 
0.901
cnot9
CCR4-NOT transcription complex subunit 9.
    
 0.896
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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