STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101160421CCR4-NOT transcription complex, subunit 6a. (559 aa)    
Predicted Functional Partners:
cnot1
CCR4-NOT transcription complex, subunit 1.
   
 0.980
LOC101165240
CCR4-NOT transcription complex, subunit 7.
    
 0.967
cnot9
CCR4-NOT transcription complex subunit 9.
    
 0.960
cnot8
CCR4-NOT transcription complex, subunit 8.
    
 0.959
cnot4
CCR4-NOT transcription complex, subunit 4a.
    
 0.953
cnot11
CCR4-NOT transcription complex, subunit 11.
    
 0.937
cnot10
CCR4-NOT transcription complex, subunit 10.
    
 0.920
cnot3
CCR4-NOT transcription complex, subunit 3a.
    
 0.915
LOC101168303
CCR4-NOT transcription complex, subunit 3b.
    
 0.915
LOC101162525
CCR4-NOT transcription complex, subunit 2.
    
 0.914
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.