STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbp4Retinol binding protein 4, plasma; Belongs to the calycin superfamily. Lipocalin family. (206 aa)    
Predicted Functional Partners:
LOC101169773
5-hydroxyisourate hydrolase; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
   
 0.970
LOC101172405
5-hydroxyisourate hydrolase; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
   
 0.970
LOC101157279
Uncharacterized protein.
     
 0.818
stra6
Stimulated by retinoic acid 6.
     
 0.818
LOC105356224
Retinol binding protein 1, cellular, tandem duplicate 1; Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family.
   
 
 0.727
ol-vit1
Uncharacterized protein.
   
  
 0.548
LOC101163464
SERPIN domain-containing protein; Belongs to the serpin family.
   
  
 0.532
LOC101160308
Serpin peptidase inhibitor, clade B (ovalbumin), member 1; Belongs to the serpin family.
   
  
 0.530
LOC101161031
Choline kinase alpha.
      
 0.519
upp2
Uridine phosphorylase; Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis.
      
 0.515
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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