Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101160409Contactin 3a, tandem duplicate 2. (1018 aa)    
Predicted Functional Partners:
ptprg
Carbonic anhydrase XVI b.
    
 
 0.677
LOC101156435
Contactin associated protein like 3.
   
 0.551
H2LAH9_ORYLA
Uncharacterized protein.
   
 0.551
cntnap1
Contactin associated protein 1.
   
 0.551
LOC101156356
Contactin associated protein like 2b.
   
 0.551
cntnap2
Contactin associated protein like 2.
   
 0.551
LOC101169574
Contactin associated protein-like 5a.
   
 0.551
LOC101164215
Uncharacterized protein.
   
 0.537
l1cam
L1 cell adhesion molecule, paralog a.
   
 0.537
LOC101160163
Uncharacterized protein.
   
 0.537
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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