Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
snrnp25Small nuclear ribonucleoprotein 25. (180 aa)    
Predicted Functional Partners:
pdcd7
Programmed cell death 7.
    
 0.999
snrnp48
Small nuclear ribonucleoprotein 48 (U11/U12).
    
 0.999
snrnp35
Small nuclear ribonucleoprotein 35 (U11/U12).
    
 0.993
zmat5
Zinc finger, matrin-type 5.
   
 0.991
zcrb1
Zinc finger CCHC-type and RNA binding motif 1.
     
 0.980
rnpc3
RNA-binding region (RNP1, RRM) containing 3.
     
 0.977
snrpg
Small nuclear ribonucleoprotein G.
     
  0.976
rbm41
RNA binding motif protein 41.
     
 0.942
lsm7
LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 
 0.942
sf3b1
Splicing factor 3b, subunit 1.
    
  0.939
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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