STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
snrnp25Small nuclear ribonucleoprotein 25. (180 aa)    
Predicted Functional Partners:
snrnp48
Small nuclear ribonucleoprotein 48 (U11/U12).
     
 0.919
snrnp35
Small nuclear ribonucleoprotein 35 (U11/U12).
    
 0.906
snrpd1
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
     
 0.848
zmat5
Zinc finger, matrin-type 5.
   
 
 0.847
snrpd3
Small nuclear ribonucleoprotein Sm D3.
   
 
 0.840
phf5a
PHD finger protein 5A.
    
 0.812
snrpg
Small nuclear ribonucleoprotein G.
     
  0.806
snrnp70
Small nuclear ribonucleoprotein 70 (U1).
    
 0.804
sf3b6
Splicing factor 3b, subunit 6.
    
 0.793
zcrb1
Zinc finger CCHC-type and RNA binding motif 1.
     
 0.788
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.