STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101173559JAZF zinc finger 1b. (243 aa)    
Predicted Functional Partners:
meaf6
MYST/Esa1-associated factor 6.
    
 
 0.932
trrap
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
   
 
 0.916
yeats4
YEATS domain containing 4.
    
   0.893
ruvbl1
RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.
    
 
 0.881
dmap1
DNA methyltransferase 1 associated protein 1.
    
   0.877
ing3
Inhibitor of growth protein.
    
 
 0.799
LOC101155312
MYCL proto-oncogene, bHLH transcription factor a.
    
   0.783
mbtd1
Mbt domain containing 1.
    
 
 0.777
l3mbtl2
L3MBTL histone methyl-lysine binding protein 2.
    
 
 0.777
LOC101165206
FCS-type domain-containing protein.
    
 
 0.777
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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