Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
c5h12orf10Melanocyte proliferating gene 1. (396 aa)    
Predicted Functional Partners:
pfdn5
Prefoldin 5.
   
  
 0.813
hmg20a
High mobility group 20A.
   
   0.806
hibch
3-hydroxyisobutyryl-CoA hydrolase, mitochondrial; Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite; Belongs to the enoyl-CoA hydratase/isomerase family.
   
   0.761
c9h12orf65
Si:ch211-275j6.5.
    
   0.759
c6h11orf49
Zgc:92873.
      
 0.731
acot9
Acyl-CoA thioesterase 9, tandem duplicate 2.
   
   0.718
mfsd5
Major facilitator superfamily domain containing 5.
      
 0.716
trmt13
tRNA methyltransferase 13 homolog.
      
 0.684
lhpp
Phospholysine phosphohistidine inorganic pyrophosphate phosphatase.
   
   0.675
rtca
RNA 3'-terminal phosphate cyclase.
   
  
 0.670
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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