STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
c5h12orf10Melanocyte proliferating gene 1. (396 aa)    
Predicted Functional Partners:
ndufs2
NADH:ubiquinone oxidoreductase core subunit S2; Belongs to the complex I 49 kDa subunit family.
   
    0.658
LOC101169635
Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial; Flavoprotein (FP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).
   
    0.612
sdhc
Succinate dehydrogenase complex, subunit C, integral membrane protein.
   
    0.603
LOC101175628
Uncharacterized protein.
   
    0.594
NDUFS8
NADH:ubiquinone oxidoreductase core subunit S8.
   
    0.594
rtca
RNA 3'-terminal phosphate cyclase.
   
  
 0.584
trmt13
tRNA methyltransferase 13 homolog.
      
 0.572
mfsd5
Major facilitator superfamily domain containing 5.
   
  
 0.570
c6h11orf49
Zgc:92873.
      
 0.566
pfdn5
Prefoldin 5.
      
 0.559
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.