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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101173798Cyclic AMP-dependent transcription factor ATF-7; Plays important functions in early cell signaling. Binds the cAMP response element (CRE) (consensus: 5'-GTGACGT[AG][AG]-3'), a sequence present in many viral and cellular promoters. (494 aa)    
Predicted Functional Partners:
LOC101166594
Ribosomal protein S6 kinase.
   
 0.913
LOC101160956
JunE proto-oncogene, AP-1 transcription factor subunit.
   
 0.802
ENSORLP00000032968
Jun proto-oncogene, AP-1 transcription factor subunit; Belongs to the bZIP family.
   
 0.802
LOC101160964
Uncharacterized protein; Belongs to the protein kinase superfamily.
    
 0.692
prkacb
Uncharacterized protein; Belongs to the protein kinase superfamily.
    
 0.692
LOC101163742
Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate a; Belongs to the protein kinase superfamily.
    
 0.692
LOC101170876
Uncharacterized protein; Belongs to the protein kinase superfamily.
    
 0.692
c-fos
BZIP domain-containing protein.
    
 0.665
fosl2
Fos-like antigen 2.
    
 0.657
JUND
BZIP domain-containing protein.
   
 0.651
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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