STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
trilTLR4 interactor with leucine-rich repeats. (758 aa)    
Predicted Functional Partners:
LOC101172732
Glycoprotein IX (platelet).
   
 0.725
c-fos
BZIP domain-containing protein.
    
 
 0.599
gp1bb
Glycoprotein Ib platelet subunit beta.
   
 0.552
C1QL2
Complement C1q like 2.
    
 0.507
cand1
Cullin-associated and neddylation-dissociated 1.
     
 0.488
trir
Telomerase RNA component interacting RNase.
      
 0.469
LOC101168692
Prepronociceptin a.
      
 0.463
adamts8
ADAM metallopeptidase with thrombospondin type 1 motif, 15b.
      
 0.462
LOC101158595
Nardilysin b (N-arginine dibasic convertase); Belongs to the peptidase M16 family.
      
 0.445
H2LEG2_ORYLA
Peptidase_M16_C domain-containing protein.
      
 0.445
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.