Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101159378Iroquois homeobox 4a. (470 aa)    
Predicted Functional Partners:
LOC101162949
Iroquois homeobox 1a.
   
 
 0.736
LOC101155782
Iroquois homeobox 1b.
   
 
 0.736
LOC101168740
Mohawk homeobox b.
    
 
 0.621
mkx
Mohawk homeobox a.
    
 
 0.621
themis2
Thymocyte selection associated family member 2.
      
 0.535
TMEM43
Uncharacterized protein.
      
 0.529
bahd1
Bromo adjacent homology domain containing 1.
    
 
 0.512
nfkbid
ANK_REP_REGION domain-containing protein.
   
 
 0.511
pik3ip1
Phosphoinositide-3-kinase interacting protein 1.
      
 0.508
fbxl5
F-box and leucine-rich repeat protein 5.
      
 0.507
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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