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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101159378Iroquois homeobox 4a. (470 aa)    
Predicted Functional Partners:
LOC101161581
Diencephalon/mesencephalon homeobox 1a.
    
 
 0.550
bahd1
Bromo adjacent homology domain containing 1.
    
 
 0.548
pik3ip1
Phosphoinositide-3-kinase interacting protein 1.
      
 0.520
cryba4
Crystallin, beta A4; Belongs to the beta/gamma-crystallin family.
   
  
 0.516
TMEM43
Uncharacterized protein.
      
 0.516
themis2
Thymocyte selection associated family member 2.
      
 0.514
crybb1
Crystallin, beta B1; Belongs to the beta/gamma-crystallin family.
   
  
 0.513
fbxl5
F-box and leucine-rich repeat protein 5.
      
 0.513
nfkbid
ANK_REP_REGION domain-containing protein.
   
  
 0.511
Glrx3
Glutaredoxin 3.
      
 0.510
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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