Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101156997WH1 domain-containing protein. (419 aa)    
Predicted Functional Partners:
zyx
Uncharacterized protein.
   
 0.807
LOC101166499
Profilin; Belongs to the profilin family.
   
 0.700
H2MVY4_ORYLA
Capping protein regulator and myosin 1 linker 2.
      
 0.697
sphkap
SPHK1 interactor, AKAP domain containing.
      
 0.697
fblim1
Filamin binding LIM protein 1.
    
 0.696
trip6
Uncharacterized protein.
    
 0.675
LOC101167359
LIM domain containing preferred translocation partner in lipoma.
    
 0.675
SPHK1
Sphingosine kinase 1.
      
 0.650
tes
Testis derived transcript (3 LIM domains).
   
 0.628
abl2
Tyrosine-protein kinase.
    
 
 0.627
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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