Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dffaDNA fragmentation factor, alpha polypeptide. (322 aa)    
Predicted Functional Partners:
LOC100049265
Caspase 3, apoptosis-related cysteine peptidase a; Belongs to the peptidase C14A family.
    
 0.908
casp3
Uncharacterized protein; Belongs to the peptidase C14A family.
    
 0.908
LOC101158094
Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.
     
  0.900
LOC101161875
Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.
     
  0.900
LOC101157849
Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.
     
  0.900
dffb
DNA fragmentation factor, beta polypeptide (caspase-activated DNase).
    
 0.836
LOC101156812
Cell death inducing DFFA like effector c.
   
  0.680
LOC101157431
Uncharacterized protein.
   
  
 0.453
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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