Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC101174902Ectodermal-neural cortex 3. (589 aa)    
Predicted Functional Partners:
LOC101172920
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 0.805
CUL3
Cullin 3; Belongs to the cullin family.
    
 0.805
nudcd3
NudC domain containing 3.
    
   0.704
nfe2l2
Nuclear factor, erythroid 2-like 2a.
    
  0.669
LOC101161115
TIP120 domain-containing protein.
     
 0.633
cand1
Cullin-associated and neddylation-dissociated 1.
     
 0.633
klhl13
Kelch-like family member 13.
  
 
 
0.551
ubxn7
UBX domain protein 7.
    
  0.537
btbd7
BTB (POZ) domain containing 7.
      
 0.535
s100b
S100 calcium binding protein, beta (neural); Belongs to the S-100 family.
      
 0.535
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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