STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101163615FRA10A associated CGG repeat 1. (332 aa)    
Predicted Functional Partners:
cwc27
CWC27 spliceosome associated cyclophilin.
   
   0.626
ess2
Ess-2 splicing factor homolog.
    
 
 0.580
engase
Endo-beta-N-acetylglucosaminidase.
      
 0.559
LOC101157048
WNK lysine deficient protein kinase 2.
    
  0.491
mettl3
Methyltransferase like 3; Belongs to the MT-A70-like family.
      
 0.465
zrsr2
Zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2.
   
 
 0.460
cherp
Calcium homeostasis endoplasmic reticulum protein.
    
 
 0.456
sf3b2
Splicing factor 3b, subunit 2.
    
 
 0.431
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.