STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101162949Iroquois homeobox 1a. (500 aa)    
Predicted Functional Partners:
LOC101159378
Iroquois homeobox 4a.
   
 
 0.736
irx6
Iroquois homeobox 6a.
   
 
 0.736
LOC101161251
Uncharacterized protein.
    
 0.684
dlx1
Distal-less homeobox 1a.
   
 
 0.661
dlx2
Homeobox domain-containing protein.
   
 
 0.639
LOC101168740
Mohawk homeobox b.
    
 
 0.627
mkx
Mohawk homeobox a.
    
 
 0.627
irx3
Iroquois homeobox 3a.
   
  
 0.514
hhex
Homeobox domain-containing protein.
   
 
 0.492
rax
Rx3 protein.
    
 
 0.490
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (22%) [HD]