STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hnrnpkHeterogeneous nuclear ribonucleoprotein K. (447 aa)    
Predicted Functional Partners:
hnrnpm
Heterogeneous nuclear ribonucleoprotein M.
   
 0.996
hnrnpu
Heterogeneous nuclear ribonucleoprotein Ub.
   
 0.993
LOC101167735
RRM domain-containing protein.
   
 0.991
LOC101163114
RRM domain-containing protein.
   
 0.991
rbmx
RNA binding motif protein X-linked.
   
 0.989
LOC101174914
Uncharacterized protein.
   
 0.971
hnrnpa3
Heterogeneous nuclear ribonucleoprotein A3.
   
 0.971
u2af2
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 
 0.923
HNRNPUL1
Heterogeneous nuclear ribonucleoprotein U like 1.
   
 0.914
syncrip
Synaptotagmin binding, cytoplasmic RNA interacting protein, like.
   
 0.913
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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