slc35g1 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

slc35g1

Solute carrier family 35 member G1. (411 aa)

Predicted Functional Partners:

plce1

0.914

slc35e1

0.763

noc3l

0.696

slc37a1

0.687

INPP5A

0.649

LOC101171587

0.649

slc35c1

0.575

slc10a7

0.544

LOC101172259

0.535

SLC10A1

0.535

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
INPP5A	LOC101171587	ENSORLP00000000668	ENSORLP00000014413	Inositol polyphosphate-5-phosphatase A.	Inositol polyphosphate-5-phosphatase L.	0.902
INPP5A	noc3l	ENSORLP00000000668	ENSORLP00000030583	Inositol polyphosphate-5-phosphatase A.	Nucleolar complex protein 3 homolog.	0.534
INPP5A	plce1	ENSORLP00000000668	ENSORLP00000039359	Inositol polyphosphate-5-phosphatase A.	Phospholipase C, epsilon 1.	0.874
INPP5A	slc35g1	ENSORLP00000000668	ENSORLP00000006511	Inositol polyphosphate-5-phosphatase A.	Solute carrier family 35 member G1.	0.649
LOC101171587	INPP5A	ENSORLP00000014413	ENSORLP00000000668	Inositol polyphosphate-5-phosphatase L.	Inositol polyphosphate-5-phosphatase A.	0.902
LOC101171587	noc3l	ENSORLP00000014413	ENSORLP00000030583	Inositol polyphosphate-5-phosphatase L.	Nucleolar complex protein 3 homolog.	0.534
LOC101171587	plce1	ENSORLP00000014413	ENSORLP00000039359	Inositol polyphosphate-5-phosphatase L.	Phospholipase C, epsilon 1.	0.874
LOC101171587	slc35g1	ENSORLP00000014413	ENSORLP00000006511	Inositol polyphosphate-5-phosphatase L.	Solute carrier family 35 member G1.	0.649
LOC101172259	slc35g1	ENSORLP00000000663	ENSORLP00000006511	Zgc:113149.	Solute carrier family 35 member G1.	0.535
SLC10A1	slc10a7	ENSORLP00000031015	ENSORLP00000042571	Solute carrier family 10 member 1.	Sodium/bile acid cotransporter; Does not show transport activity towards bile acids or steroid sulfates; Belongs to the bile acid:sodium symporter (BASS) (TC 2.A.28) family.	0.764
SLC10A1	slc35g1	ENSORLP00000031015	ENSORLP00000006511	Solute carrier family 10 member 1.	Solute carrier family 35 member G1.	0.535
SLC10A1	slc37a1	ENSORLP00000031015	ENSORLP00000025807	Solute carrier family 10 member 1.	Solute carrier family 37 member 1.	0.470
noc3l	INPP5A	ENSORLP00000030583	ENSORLP00000000668	Nucleolar complex protein 3 homolog.	Inositol polyphosphate-5-phosphatase A.	0.534
noc3l	LOC101171587	ENSORLP00000030583	ENSORLP00000014413	Nucleolar complex protein 3 homolog.	Inositol polyphosphate-5-phosphatase L.	0.534
noc3l	plce1	ENSORLP00000030583	ENSORLP00000039359	Nucleolar complex protein 3 homolog.	Phospholipase C, epsilon 1.	0.834
noc3l	slc35g1	ENSORLP00000030583	ENSORLP00000006511	Nucleolar complex protein 3 homolog.	Solute carrier family 35 member G1.	0.696
plce1	INPP5A	ENSORLP00000039359	ENSORLP00000000668	Phospholipase C, epsilon 1.	Inositol polyphosphate-5-phosphatase A.	0.874
plce1	LOC101171587	ENSORLP00000039359	ENSORLP00000014413	Phospholipase C, epsilon 1.	Inositol polyphosphate-5-phosphatase L.	0.874
plce1	noc3l	ENSORLP00000039359	ENSORLP00000030583	Phospholipase C, epsilon 1.	Nucleolar complex protein 3 homolog.	0.834
plce1	slc35g1	ENSORLP00000039359	ENSORLP00000006511	Phospholipase C, epsilon 1.	Solute carrier family 35 member G1.	0.914