LOC101168137 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC101168137

Rho GTPase activating protein 32a. (895 aa)

Predicted Functional Partners:

CDC42

0.669

LOC101164400

0.669

mlst8

0.588

rictor

0.530

LOC101164658

0.525

LOC101174454

0.525

grb2

0.504

mapkap1

0.498

rhou

0.495

rhov

0.495

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDC42	LOC101168137	ENSORLP00000015084	ENSORLP00000006515	Cell division cycle 42.	Rho GTPase activating protein 32a.	0.669
CDC42	grb2	ENSORLP00000015084	ENSORLP00000019097	Cell division cycle 42.	Growth factor receptor-bound protein 2b.	0.688
CDC42	rhou	ENSORLP00000015084	ENSORLP00000013398	Cell division cycle 42.	Uncharacterized protein.	0.488
CDC42	rhov	ENSORLP00000015084	ENSORLP00000030695	Cell division cycle 42.	Ras homolog family member V.	0.488
LOC101164400	LOC101168137	ENSORLP00000034529	ENSORLP00000006515	Uncharacterized protein.	Rho GTPase activating protein 32a.	0.669
LOC101164400	grb2	ENSORLP00000034529	ENSORLP00000019097	Uncharacterized protein.	Growth factor receptor-bound protein 2b.	0.688
LOC101164400	rhou	ENSORLP00000034529	ENSORLP00000013398	Uncharacterized protein.	Uncharacterized protein.	0.488
LOC101164400	rhov	ENSORLP00000034529	ENSORLP00000030695	Uncharacterized protein.	Ras homolog family member V.	0.488
LOC101164658	LOC101168137	ENSORLP00000007959	ENSORLP00000006515	Uncharacterized protein.	Rho GTPase activating protein 32a.	0.525
LOC101164658	grb2	ENSORLP00000007959	ENSORLP00000019097	Uncharacterized protein.	Growth factor receptor-bound protein 2b.	0.559
LOC101168137	CDC42	ENSORLP00000006515	ENSORLP00000015084	Rho GTPase activating protein 32a.	Cell division cycle 42.	0.669
LOC101168137	LOC101164400	ENSORLP00000006515	ENSORLP00000034529	Rho GTPase activating protein 32a.	Uncharacterized protein.	0.669
LOC101168137	LOC101164658	ENSORLP00000006515	ENSORLP00000007959	Rho GTPase activating protein 32a.	Uncharacterized protein.	0.525
LOC101168137	LOC101174454	ENSORLP00000006515	ENSORLP00000028896	Rho GTPase activating protein 32a.	Uncharacterized protein.	0.525
LOC101168137	grb2	ENSORLP00000006515	ENSORLP00000019097	Rho GTPase activating protein 32a.	Growth factor receptor-bound protein 2b.	0.504
LOC101168137	mapkap1	ENSORLP00000006515	ENSORLP00000016595	Rho GTPase activating protein 32a.	MAPK associated protein 1.	0.498
LOC101168137	mlst8	ENSORLP00000006515	ENSORLP00000003877	Rho GTPase activating protein 32a.	MTOR associated protein, LST8 homolog (S. cerevisiae).	0.588
LOC101168137	rhou	ENSORLP00000006515	ENSORLP00000013398	Rho GTPase activating protein 32a.	Uncharacterized protein.	0.495
LOC101168137	rhov	ENSORLP00000006515	ENSORLP00000030695	Rho GTPase activating protein 32a.	Ras homolog family member V.	0.495
LOC101168137	rictor	ENSORLP00000006515	ENSORLP00000016159	Rho GTPase activating protein 32a.	RPTOR independent companion of MTOR, complex 2 a.	0.530