STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101172074AMP-binding domain-containing protein. (685 aa)    
Predicted Functional Partners:
LOC101155585
Solute carrier family 27 member 2a.
  
  
 
0.901
LOC101155834
Uncharacterized protein.
  
  
 
0.901
bbs7
Bardet-Biedl syndrome 7.
   
 0.778
bbs9
Bardet-Biedl syndrome 9.
   
 0.771
bbs1
Bardet-Biedl syndrome 1.
   
 0.759
bbs4
Bardet-Biedl syndrome 4.
    
 0.756
ttc8
Tetratricopeptide repeat domain 8.
    
 0.739
LOC101159762
1-acyl-sn-glycerol-3-phosphate acyltransferase; Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family.
   
 
 0.631
ephx2
AB hydrolase-1 domain-containing protein.
   
 0.630
ENSORLP00000044528
BBSome interacting protein 1.
    
 0.630
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.