STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nprl3NPR3-like, GATOR1 complex subunit. (491 aa)    
Predicted Functional Partners:
wdr24
WD repeat domain 24.
    
 0.996
LOC101162152
Ras-related GTP binding A.
    
 0.996
mios
Missing oocyte, meiosis regulator, homolog (Drosophila).
    
 0.996
Depdc5
Uncharacterized protein.
    
 0.996
nprl2
NPR2 like, GATOR1 complex subunit.
    
 0.996
wdr59
WD repeat domain 59.
    
 0.996
seh1l
SEH1-like (S. cerevisiae); Belongs to the WD repeat SEC13 family.
    
 0.992
sec13
SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family.
    
 0.989
kptn
Kaptin (actin binding protein).
    
 0.954
SZT2
SZT2 subunit of KICSTOR complex.
    
 0.930
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.