Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101164086Actinin, alpha 2b. (895 aa)    
Predicted Functional Partners:
actn3
Actinin alpha 3b.
  
  
 
0.900
ENSORLP00000035524
Uncharacterized protein.
 
 
 0.884
vcl
Vinculin b.
   
 
 0.788
LOC101172101
Vinculin a.
   
 
 0.788
LOC101170382
Actin, alpha cardiac.
   
 0.758
Sptan1
Uncharacterized protein.
 
 
 0.754
LOC101160009
Calcium/calmodulin-dependent protein kinase (CaM kinase) II beta 2; Belongs to the protein kinase superfamily.
   
 0.744
LOC101168431
Protein kinase domain-containing protein.
   
 0.744
camk2a
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
   
 0.744
LOC101172229
Calcium/calmodulin-dependent protein kinase (CaM kinase) II delta 1; Belongs to the protein kinase superfamily.
   
 0.744
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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