STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101164086Actinin, alpha 2b. (895 aa)    
Predicted Functional Partners:
ENSORLP00000035524
Uncharacterized protein.
 
 
 0.875
LOC101170382
Actin, alpha cardiac.
   
 0.787
LOC101167500
Myosin, light chain 1, alkali; skeletal, fast.
   
 0.769
Sptan1
Uncharacterized protein.
 
 
 0.743
vcl
Vinculin b.
   
 
 0.679
LOC101172101
Vinculin a.
   
 
 0.679
MYOZ1
Myozenin 1.
   
 
 0.676
LOC105354378
Troponin T type 2a (cardiac).
   
 0.657
capzb
F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.
    
 0.652
LOC101156569
Troponin I type 1b (skeletal, slow).
   
 0.638
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.