STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
snx16Sorting nexin 16. (351 aa)    
Predicted Functional Partners:
pitx1
Homeobox protein.
      
 0.667
ripk2
Receptor-interacting serine-threonine kinase 2.
    
 0.582
LOC101172780
Leucine-rich repeats and transmembrane domains 2a.
     
 0.560
vps26a
VPS26, retromer complex component A.
   
 
 0.499
wwp1
WW domain containing E3 ubiquitin protein ligase 1.
    
 0.468
snx17
Sorting nexin 17.
      
 0.468
snx15
Sorting nexin 15.
     
 0.452
fchsd2
FCH and double SH3 domains 2.
    
 
 0.427
LOC101168430
Si:ch211-176g13.8.
    
 
 0.427
fchsd1
Uncharacterized protein.
    
 
 0.427
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.