STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101159773Scinderin like b. (720 aa)    
Predicted Functional Partners:
LOC101158206
Uncharacterized protein.
  
  
 
0.902
gsn
Gelsolin a.
  
  
 
0.901
tmod4
Tropomodulin 4 (muscle).
    
 
 0.828
tmod1
Tropomodulin 1.
    
 
 0.828
tmod3
Tropomodulin 2.
    
 
 0.780
cog6
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
   
 
 0.719
cog8
Component of oligomeric golgi complex 8.
    
 
 0.713
cog3
Component of oligomeric golgi complex 3.
    
 
 0.712
pikfyve
Phosphoinositide kinase, FYVE finger containing.
     
 0.655
LOC101173218
Phosphatidylinositol-5-phosphate 4-kinase, type II, gamma b.
     
  0.650
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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