STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sp7Sp7 transcription factor. (460 aa)    
Predicted Functional Partners:
LOC101164922
Cathepsin K; Belongs to the peptidase C1 family.
    
 
 0.679
runx2
Runt-related transcription factor.
    
 0.678
LOC100529176
Collagen, type X, alpha 1a.
    
 0.670
sost
Sclerostin.
    
 
 0.662
col2a1a
Type II collagen A isoform 1.
    
 0.588
LOC100529192
Collagen, type II, alpha 1a.
    
 0.588
serpinf1
SERPIN domain-containing protein; Belongs to the serpin family.
    
 0.538
col1a2
Collagen, type I, alpha 2.
    
 0.523
pdlim7
PDZ and LIM domain 7.
    
 
 0.517
entpd5
Ectonucleoside triphosphate diphosphohydrolase 5a; Belongs to the GDA1/CD39 NTPase family.
      
 0.510
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.