STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101162281Immunoglobulin superfamily, member 8. (629 aa)    
Predicted Functional Partners:
LOC101173781
Tetraspanin.
    
 
 0.779
CD9
Tetraspanin.
    
 
 0.779
LOC101159818
Ornithine decarboxylase antizyme 2a.
      
 0.558
trmt13
tRNA methyltransferase 13 homolog.
      
 0.544
c5h12orf10
Melanocyte proliferating gene 1.
      
 0.538
LRRC3
Leucine rich repeat containing 3.
      
 0.522
H2MHH6_ORYLA
Leucine rich repeat containing 3.
      
 0.522
rtca
RNA 3'-terminal phosphate cyclase.
      
 0.518
LOC101175317
Tetraspanin.
    
 
 0.508
LOC101156484
Tetraspanin.
    
 
 0.508
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.