STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101162281Immunoglobulin superfamily, member 8. (629 aa)    
Predicted Functional Partners:
LOC101173781
Tetraspanin.
    
 
 0.948
CD9
Tetraspanin.
    
 
 0.948
dnajc14
DnaJ (Hsp40) homolog, subfamily C, member 14.
    
   0.920
LOC101159818
Ornithine decarboxylase antizyme 2a.
      
 0.726
LOC101175317
Tetraspanin.
    
 
 0.637
LOC101156484
Tetraspanin.
    
 
 0.637
pif1
ATP-dependent DNA helicase PIF1; DNA-dependent ATPase and 5'-3' DNA helicase required for the maintenance of both mitochondrial and nuclear genome stability.
      
 0.603
fndc4
Fibronectin type III domain containing 4a.
      
 0.592
LOC101172780
Leucine-rich repeats and transmembrane domains 2a.
      
 0.575
LOC101162995
Bone morphogenetic protein/retinoic acid inducible neural-specific 3a, tandem duplicate 1.
      
 0.569
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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