STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101158529Beta-type globin; Belongs to the globin family. (147 aa)    
Predicted Functional Partners:
gb-3
GLOBIN domain-containing protein; Belongs to the globin family.
  
 
  0.925
ENSORLP00000031017
Si:ch211-5k11.8; Belongs to the globin family.
  
 
 
0.914
LOC101170468
Zgc:163057; Belongs to the globin family.
  
 
 
0.911
LOC101174997
GLOBIN domain-containing protein; Belongs to the globin family.
  
 
 
0.908
gb
Hemoglobin embryonic subunit alpha; Involved in oxygen transport from gills to the various peripheral tissues.
  
 
 
0.908
LOC101175481
Alpha-type globin; Belongs to the globin family.
  
 
 
0.908
LOC101175238
GLOBIN domain-containing protein; Belongs to the globin family.
  
 
 
0.908
LOC101158279
Hemoglobin, beta adult 1; Belongs to the globin family.
  
 
 
0.907
LOC101159018
GLOBIN domain-containing protein; Belongs to the globin family.
  
 
 
0.906
gb-2
Embryonic beta-type globin; Belongs to the globin family.
  
  
 
0.901
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.