close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
col8a2Collagen, type VIII, alpha 2. (688 aa)    
Predicted Functional Partners:
nt5dc1
5'-nucleotidase domain containing 1.
      
 0.813
LOC101157019
Tyrosine-protein kinase.
    
 0.594
Col27a1
LAM_G_DOMAIN domain-containing protein.
 
   
  0.576
abhd10
Transgelin 3b.
      
 0.563
ENSORLP00000039810
Uncharacterized protein.
 
   
  0.522
ENSORLP00000027031
Uncharacterized protein.
 
     0.521
COL8A1
Collagen type VIII alpha 1 chain.
  
  
0.465
ENSORLP00000041124
Uncharacterized protein.
  
 
  0.464
col8a1
Collagen, type VIII, alpha 1b.
  
  
0.457
ENSORLP00000045854
Uncharacterized protein.
 
   
 0.451
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.