Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101164350Protocadherin-related 15b. (1728 aa)    
Predicted Functional Partners:
LOC101167616
Usher syndrome 1C.
   
 
 0.930
cdhr2
Uncharacterized protein.
   
0.896
Cdh23
Uncharacterized protein.
   
 0.879
LOC101169538
Usher syndrome 1Ga (autosomal recessive).
   
 0.659
LOC101163611
Si:dkey-183c6.8.
      
 0.656
LOC101172880
O-GlcNAcase like.
      
 0.656
ENSORLP00000036342
Stereocilin.
    
 0.643
lhfpl5
LHFPL tetraspan subfamily member 5b.
    
 0.603
LOC101161799
LHFPL tetraspan subfamily member 5a.
    
 0.603
H2L6P1_ORYLA
LHFPL tetraspan subfamily member 4a.
    
 0.584
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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