STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101164834FH2 domain-containing protein. (377 aa)    
Predicted Functional Partners:
SPIRE1
Spire type actin nucleation factor 1.
    
 0.876
LOC101166499
Profilin; Belongs to the profilin family.
    
 0.698
LOC101161232
Profilin; Belongs to the profilin family.
    
 0.662
Myo5b
Myosin VB; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
    
 
 0.640
ENSORLP00000044450
Myosin VB; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
    
 
 0.640
suox
Sulfite oxidase.
      
 0.630
RAB11A
RAB11A, member RAS oncogene family.
   
 0.623
washc1
WAS protein family homolog 1.
    
 0.530
actl6a
Actin-like 6A; Belongs to the actin family.
   
 0.502
LOC101168748
Uncharacterized protein.
    
 0.480
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.