Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LOC101160021Si:rp71-39b20.4; Belongs to the potassium channel family. (524 aa)    
Predicted Functional Partners:
fau
40S ribosomal protein S30.
   
  0.817
rpl30
Ribosomal protein L30.
   
 0.579
rpl21
Ribosomal protein L21.
   
 0.579
rpl31
Ribosomal protein L31.
   
 0.578
rpl34
Ribosomal protein L34.
  
 0.578
rpl29
60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.
   
 0.578
rpl13
60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family.
   
 0.566
rpl24
Ribosomal protein L24.
   
 0.562
rpl18a
60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family.
   
 0.557
rpl23
Ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family.
   
 0.551
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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