Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101163063Ras association (RalGDS/AF-6) and pleckstrin homology domains 1b. (1438 aa)    
Predicted Functional Partners:
LOC101175519
Uncharacterized protein.
   
 
 0.910
LOC101167529
RAP1A, member of RAS oncogene family b.
    
 0.698
LOC101172864
Uncharacterized protein.
    
 0.698
LOC101171247
RAP1A, member of RAS oncogene family a.
    
 0.698
nck1
Cytoplasmic protein.
    
 
 0.673
nck2
Cytoplasmic protein.
    
 
 0.673
LOC101170217
Abl-interactor 1b.
   
 
 0.671
ABI1
Abl-interactor 1a.
   
 
 0.671
grb2
Growth factor receptor-bound protein 2b.
    
 0.644
SAMD5
Sterile alpha motif domain containing 5.
     
 0.643
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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