STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101161565CDC-like kinase 4a. (561 aa)    
Predicted Functional Partners:
LOC110017476
Arginine/serine-rich protein 1.
   
 
 0.715
srsf10
Serine and arginine rich splicing factor 10.
   
 
 0.681
ogt
O-linked N-acetylglucosamine (GlcNAc) transferase, tandem duplicate 1.
   
  
 0.651
ythdc1
YTH domain containing 1.
   
 
 0.650
SNIP1
Smad nuclear interacting protein 1.
    
   0.616
LOC101170959
Apoptotic chromatin condensation inducer 1b.
   
 
 0.596
acin1
SAP domain-containing protein.
   
 
 0.596
LOC101162697
Serine and arginine rich splicing factor 1a.
   
 
 0.570
LOC101171767
Uncharacterized protein.
   
 
 0.570
clasrp
CLK4-associating serine/arginine rich protein.
    
 
 0.544
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.