STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mdh1bMalate dehydrogenase 1B, NAD (soluble). (477 aa)    
Predicted Functional Partners:
LOC101173617
Malate synthase-like.
  
 0.950
cs
Citrate synthase; Belongs to the citrate synthase family.
  
 0.884
got2
Aspartate aminotransferase.
   
 0.827
fh
Fumarate hydratase.
  
 0.824
morn5
MORN repeat containing 5.
   
 
 0.806
maats1
MYCBP-associated, testis expressed 1.
   
   0.770
Dnali1
Dynein, axonemal, light intermediate chain 1.
   
   0.759
LOC101171328
Isocitrate dehydrogenase [NADP]; Belongs to the isocitrate and isopropylmalate dehydrogenases family.
  
 0.757
LOC101166704
Isocitrate dehydrogenase [NADP]; Belongs to the isocitrate and isopropylmalate dehydrogenases family.
  
 0.757
nme5
NME/NM23 family member 5; Belongs to the NDK family.
  
 
 0.750
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.