LOC101164837 protein (Oryzias latipes) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

LOC101164837

Uncharacterized protein. (3021 aa)

Predicted Functional Partners:

LOC105354522

0.819

LOC101159016

0.819

LOC101175028

0.819

LOC101163549

0.819

LOC101161977

0.780

rhobtb2

0.780

CDC42

0.771

LOC101164400

0.771

H2LP85_ORYLA

0.750

LOC101162944

0.750

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDC42	H2LP85_ORYLA	ENSORLP00000015084	ENSORLP00000007865	Cell division cycle 42.	Ras homolog gene family, member Gd.	0.609
CDC42	LOC101159016	ENSORLP00000015084	ENSORLP00000034283	Cell division cycle 42.	Uncharacterized protein.	0.777
CDC42	LOC101162944	ENSORLP00000015084	ENSORLP00000017316	Cell division cycle 42.	Ras homolog family member Gb.	0.609
CDC42	LOC101163549	ENSORLP00000015084	ENSORLP00000040285	Cell division cycle 42.	Uncharacterized protein.	0.777
CDC42	LOC101164837	ENSORLP00000015084	ENSORLP00000006660	Cell division cycle 42.	Uncharacterized protein.	0.771
CDC42	LOC101175028	ENSORLP00000015084	ENSORLP00000039764	Cell division cycle 42.	Uncharacterized protein.	0.777
CDC42	LOC105354522	ENSORLP00000015084	ENSORLP00000003336	Cell division cycle 42.	Rac family small GTPase 3b.	0.777
H2LP85_ORYLA	CDC42	ENSORLP00000007865	ENSORLP00000015084	Ras homolog gene family, member Gd.	Cell division cycle 42.	0.609
H2LP85_ORYLA	LOC101159016	ENSORLP00000007865	ENSORLP00000034283	Ras homolog gene family, member Gd.	Uncharacterized protein.	0.725
H2LP85_ORYLA	LOC101162944	ENSORLP00000007865	ENSORLP00000017316	Ras homolog gene family, member Gd.	Ras homolog family member Gb.	0.901
H2LP85_ORYLA	LOC101163549	ENSORLP00000007865	ENSORLP00000040285	Ras homolog gene family, member Gd.	Uncharacterized protein.	0.725
H2LP85_ORYLA	LOC101164400	ENSORLP00000007865	ENSORLP00000034529	Ras homolog gene family, member Gd.	Uncharacterized protein.	0.609
H2LP85_ORYLA	LOC101164837	ENSORLP00000007865	ENSORLP00000006660	Ras homolog gene family, member Gd.	Uncharacterized protein.	0.750
H2LP85_ORYLA	LOC101175028	ENSORLP00000007865	ENSORLP00000039764	Ras homolog gene family, member Gd.	Uncharacterized protein.	0.725
H2LP85_ORYLA	LOC105354522	ENSORLP00000007865	ENSORLP00000003336	Ras homolog gene family, member Gd.	Rac family small GTPase 3b.	0.725
LOC101159016	CDC42	ENSORLP00000034283	ENSORLP00000015084	Uncharacterized protein.	Cell division cycle 42.	0.777
LOC101159016	H2LP85_ORYLA	ENSORLP00000034283	ENSORLP00000007865	Uncharacterized protein.	Ras homolog gene family, member Gd.	0.725
LOC101159016	LOC101162944	ENSORLP00000034283	ENSORLP00000017316	Uncharacterized protein.	Ras homolog family member Gb.	0.725
LOC101159016	LOC101163549	ENSORLP00000034283	ENSORLP00000040285	Uncharacterized protein.	Uncharacterized protein.	0.900
LOC101159016	LOC101164400	ENSORLP00000034283	ENSORLP00000034529	Uncharacterized protein.	Uncharacterized protein.	0.777