Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC101165094Cordon-bleu WH2 repeat protein. (1444 aa)    
Predicted Functional Partners:
mmab
Corrinoid adenosyltransferase; Belongs to the Cob(I)alamin adenosyltransferase family.
      
 0.756
tmod3
Tropomodulin 2.
    
 
 0.726
ITPRID2
ITPR interacting domain containing 2.
      
 0.700
LOC101165059
Si:ch211-51c14.1.
    
 
 0.647
LOC101167654
Zgc:91999.
    
 
 0.647
pacsin3
Protein kinase C and casein kinase substrate in neurons 3.
    
 
 0.647
pacsin1
Protein kinase C and casein kinase substrate in neurons 1a.
    
 
 0.647
LOC101158350
Protein kinase C and casein kinase substrate in neurons 1b.
    
 
 0.647
pacsin2
Protein kinase C and casein kinase substrate in neurons 2.
    
 
 0.647
morn5
MORN repeat containing 5.
    
 
 0.614
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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