Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
angptl4Angiopoietin-like 4. (469 aa)    
Predicted Functional Partners:
pdgfc
Platelet derived growth factor c; Belongs to the PDGF/VEGF growth factor family.
      
 0.764
vegfb
PDGF_2 domain-containing protein; Belongs to the PDGF/VEGF growth factor family.
      
 0.722
LOC101170569
Uncharacterized protein.
     
  0.649
ARVCF
ARVCF delta catenin family member b.
     
  0.649
ctnnd1
Uncharacterized protein.
     
  0.649
ctnnb1
Catenin (cadherin-associated protein), beta 1.
   
 
 0.623
LOC101173369
Junction plakoglobin a.
   
 
 0.616
PTPN14
Protein tyrosine phosphatase non-receptor type 14.
    
 0.610
LOC101159613
Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.
     
  0.581
CDH8
Cadherin 8; Cadherins are calcium-dependent cell adhesion proteins.
     
  0.581
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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