STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pcPyruvate carboxylase b. (1048 aa)    
Predicted Functional Partners:
pccb
Propionyl-CoA carboxylase subunit beta.
 
 0.970
hlcs
Holocarboxylase synthetase.
  
 
 0.959
LOC101156855
Glutamate dehydrogenase 1b; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
     
 0.943
mccc2
Methylcrotonoyl-CoA carboxylase 2 (beta).
 
 0.877
gatb
Glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in the mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). Belongs to the GatB/GatE family. GatB subfamily.
  
 
  0.857
Mdh2
Malate dehydrogenase.
  
 0.849
LOC101163479
Si:ch211-198n5.11.
 
 0.819
cs
Citrate synthase; Belongs to the citrate synthase family.
  
 0.806
FADS6
Fatty acid desaturase 6.
     
 0.804
fdxr
NADPH:adrenodoxin oxidoreductase, mitochondrial.
     
 0.804
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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