STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101172489ADAM metallopeptidase domain 10b. (784 aa)    
Predicted Functional Partners:
LOC101158193
Tetraspanin.
    
 0.677
LOC101175360
Ephrin-A2a; Belongs to the ephrin family.
    
 0.627
LOC101155840
Ephrin RBD domain-containing protein; Belongs to the ephrin family.
    
 0.627
fam20a
FAM20A golgi associated secretory pathway pseudokinase.
   
 
  0.591
LOC101172593
Tumor necrosis factor a (TNF superfamily, member 2).
     
 0.566
LOC101174770
Tetraspanin.
   
 0.557
notch1
Notch receptor 1b.
    
 0.525
LOC101171596
Notch receptor 1a.
    
 0.525
NCSTN
Nicastrin.
    
 
 0.520
LOC101170271
Nerve growth factor receptor a (TNFR superfamily, member 16).
     
 0.509
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.