STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cnppd1Cyclin Pas1/PHO80 domain containing 1. (399 aa)    
Predicted Functional Partners:
lig4
DNA ligase.
    
 0.874
xrcc5
X-ray repair cross-complementing protein 5; Single-stranded DNA-dependent ATP-dependent helicase. Belongs to the ku80 family.
    
 0.838
xrcc6
X-ray repair complementing defective repair in Chinese hamster cells 6.
    
 0.797
H2LYJ7_ORYLA
Si:ch211-38m6.7.
      
 0.719
smim14
Small integral membrane protein 14.
      
 0.666
rcc1l
RCC1 like.
      
 0.643
lrpap1
Low density lipoprotein receptor-related protein associated protein 1.
      
 0.620
pcnp
PEST proteolytic signal containing nuclear protein.
      
 0.609
LOC101159022
Uncharacterized protein.
    
 0.609
LOC101166932
X-ray repair complementing defective repair in Chinese hamster cells 4.
    
 0.609
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.