Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
bicc1BicC family RNA binding protein 1a. (963 aa)    
Predicted Functional Partners:
trim71
Tripartite motif containing 71, E3 ubiquitin protein ligase.
      
 0.692
cnot3
CCR4-NOT transcription complex, subunit 3a.
    
 
 0.689
LOC101159320
DAN domain family, member 5.
      
 0.659
cpeb1
Cytoplasmic polyadenylation element binding protein 1b.
   
 
 0.657
pim3
Serine/threonine-protein kinase; Proto-oncogene with serine/threonine kinase activity involved in cell survival and cell proliferation. Belongs to the protein kinase superfamily. CAMK Ser/Thr protein kinase family. PIM subfamily.
      
 0.633
cenpj
Centromere protein J.
      
 0.608
ugdh
UDP-glucose 6-dehydrogenase; Involved in the biosynthesis of glycosaminoglycans; hyaluronan, chondroitin sulfate, and heparan sulfate. Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
      
 0.580
NPTX1
Uncharacterized protein.
      
 0.573
gbe1
Glucan (1,4-alpha-), branching enzyme 1b.
      
 0.570
tent2
Terminal nucleotidyltransferase 2.
   
 
 0.542
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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