STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bicc1BicC family RNA binding protein 1a. (963 aa)    
Predicted Functional Partners:
cnot3
CCR4-NOT transcription complex, subunit 3a.
    
 
 0.834
LOC101159320
DAN domain family, member 5.
      
 0.725
cnot1
CCR4-NOT transcription complex, subunit 1.
      
 0.608
adcy6
Adenylate cyclase type 6; Catalyzes the formation of the signaling molecule cAMP in response to G-protein signaling.
      
 0.588
tent2
Terminal nucleotidyltransferase 2.
   
 
 0.521
invs
Inversin.
      
 0.515
LOC101164255
Si:ch211-106h4.9.
      
 0.448
LOC101175076
Uncharacterized protein.
   
 
 0.429
CELF2
Cugbp, Elav-like family member 2.
   
 
 0.429
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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