STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pax5Paired box 5. (396 aa)    
Predicted Functional Partners:
LOC101158143
Paired box 10.
 
  
 
 0.726
LOC100049394
TLE family member 3, transcriptional corepressor.
    
 
 0.689
LOC101159690
V-ets avian erythroblastosis virus E26 oncogene homolog 1.
   
 
 0.651
ENSORLP00000027583
ETS domain-containing protein.
   
 
 0.608
gsc
Goosecoid.
    
 
 0.593
foxa2
Hepatocyte nuclear factor 3-beta; Transcription activator for a number of liver genes. Interacts with the cis-acting regulatory regions of these genes (By similarity).
      
 0.585
en2
Homeobox protein engrailed-like.
   
  
 0.512
en1
Homeobox protein engrailed-like.
   
  
 0.507
cbfb
Core-binding factor subunit beta.
     
 0.502
cd79a
CD79a molecule, immunoglobulin-associated alpha.
   
  
 0.500
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.