Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pax5Paired box 5. (396 aa)    
Predicted Functional Partners:
LOC101158143
Paired box 10.
 
  
 
 0.727
cd79a
CD79a molecule, immunoglobulin-associated alpha.
   
 
 0.662
gsc
Goosecoid.
    
 0.637
LOC101173202
RUNX family transcription factor 1.
    
 0.572
pou2af1
Uncharacterized protein.
   
 
 0.566
runx2
Runt-related transcription factor.
    
 0.539
LOC101160370
Runt-related transcription factor.
    
 0.539
LOC101155626
LIM homeobox 1b.
   
 0.533
LOC101167336
Runt domain-containing protein.
    
 0.512
e2f1
E2F transcription factor 1.
    
 
 0.488
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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