Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101161725BHLH domain-containing protein. (497 aa)    
Predicted Functional Partners:
id2
Inhibitor of DNA binding 2a.
    
 
 0.756
H2M9H6_ORYLA
Achaete-scute family bHLH transcription factor 1b.
   
 0.739
ascl1
Achaete-scute family bHLH transcription factor 1a.
   
 0.739
H2MFW7_ORYLA
BHLH domain-containing protein.
    
 0.734
LOC101174459
T-cell acute lymphocytic leukemia 1.
    
 0.734
myf6
Myogenic factor 6.
    
 0.693
myf5
Myogenic factor.
    
 0.685
LOC105357454
Myogenic factor.
    
 0.685
myod1
Myogenic factor.
    
 0.685
atoh1
Atonal bHLH transcription factor 1a.
    
 
 0.676
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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