STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101161725BHLH domain-containing protein. (497 aa)    
Predicted Functional Partners:
H2MFW7_ORYLA
BHLH domain-containing protein.
   
 0.757
LOC101174459
T-cell acute lymphocytic leukemia 1.
   
 0.757
lmo2
LIM domain only 2 (rhombotin-like 1).
    
 0.723
H2M9H6_ORYLA
Achaete-scute family bHLH transcription factor 1b.
   
 0.705
ascl1
Achaete-scute family bHLH transcription factor 1a.
   
 0.705
myf5
Myogenic factor.
   
 0.662
LOC105357454
Myogenic factor.
   
 0.662
myod1
Myogenic factor.
   
 0.662
myog
Myogenin.
   
 0.659
LOC101161879
Inhibitor of DNA binding 1, HLH protein.
    
 
 0.654
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.