pigs protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

pigs

Phosphatidylinositol glycan anchor biosynthesis, class S. (562 aa)

Predicted Functional Partners:

pigk

0.999

pigt

0.999

gpaa1

0.999

pigu

0.999

pgap1

0.949

LOC101163952

0.936

pigg

0.930

pigf

0.926

ovca2

0.706

pigv

0.704

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101163952	gpaa1	ENSORLP00000000385	ENSORLP00000021631	Uncharacterized protein.	Glycosylphosphatidylinositol anchor attachment 1.	0.936
LOC101163952	pigk	ENSORLP00000000385	ENSORLP00000004125	Uncharacterized protein.	GPI-anchor transamidase; Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein. Belongs to the peptidase C13 family.	0.929
LOC101163952	pigs	ENSORLP00000000385	ENSORLP00000006726	Uncharacterized protein.	Phosphatidylinositol glycan anchor biosynthesis, class S.	0.936
LOC101163952	pigt	ENSORLP00000000385	ENSORLP00000006114	Uncharacterized protein.	Phosphatidylinositol glycan anchor biosynthesis, class T.	0.931
LOC101163952	pigv	ENSORLP00000000385	ENSORLP00000005495	Uncharacterized protein.	GPI mannosyltransferase 2; Mannosyltransferase involved in glycosylphosphatidylinositol- anchor biosynthesis.	0.464
gpaa1	LOC101163952	ENSORLP00000021631	ENSORLP00000000385	Glycosylphosphatidylinositol anchor attachment 1.	Uncharacterized protein.	0.936
gpaa1	pgap1	ENSORLP00000021631	ENSORLP00000022849	Glycosylphosphatidylinositol anchor attachment 1.	GPI inositol-deacylase; Involved in inositol deacylation of GPI-anchored proteins. GPI inositol deacylation may important for efficient transport of GPI- anchored proteins from the endoplasmic reticulum to the Golgi.	0.956
gpaa1	pigf	ENSORLP00000021631	ENSORLP00000033130	Glycosylphosphatidylinositol anchor attachment 1.	Phosphatidylinositol glycan anchor biosynthesis, class F.	0.923
gpaa1	pigg	ENSORLP00000021631	ENSORLP00000042627	Glycosylphosphatidylinositol anchor attachment 1.	Phosphatidylinositol glycan anchor biosynthesis class G.	0.956
gpaa1	pigk	ENSORLP00000021631	ENSORLP00000004125	Glycosylphosphatidylinositol anchor attachment 1.	GPI-anchor transamidase; Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein. Belongs to the peptidase C13 family.	0.999
gpaa1	pigs	ENSORLP00000021631	ENSORLP00000006726	Glycosylphosphatidylinositol anchor attachment 1.	Phosphatidylinositol glycan anchor biosynthesis, class S.	0.999
gpaa1	pigt	ENSORLP00000021631	ENSORLP00000006114	Glycosylphosphatidylinositol anchor attachment 1.	Phosphatidylinositol glycan anchor biosynthesis, class T.	0.999
gpaa1	pigu	ENSORLP00000021631	ENSORLP00000038652	Glycosylphosphatidylinositol anchor attachment 1.	Phosphatidylinositol glycan anchor biosynthesis, class U.	0.999
gpaa1	pigv	ENSORLP00000021631	ENSORLP00000005495	Glycosylphosphatidylinositol anchor attachment 1.	GPI mannosyltransferase 2; Mannosyltransferase involved in glycosylphosphatidylinositol- anchor biosynthesis.	0.820
ovca2	pigs	ENSORLP00000004133	ENSORLP00000006726	OVCA2 serine hydrolase domain containing.	Phosphatidylinositol glycan anchor biosynthesis, class S.	0.706
pgap1	gpaa1	ENSORLP00000022849	ENSORLP00000021631	GPI inositol-deacylase; Involved in inositol deacylation of GPI-anchored proteins. GPI inositol deacylation may important for efficient transport of GPI- anchored proteins from the endoplasmic reticulum to the Golgi.	Glycosylphosphatidylinositol anchor attachment 1.	0.956
pgap1	pigg	ENSORLP00000022849	ENSORLP00000042627	GPI inositol-deacylase; Involved in inositol deacylation of GPI-anchored proteins. GPI inositol deacylation may important for efficient transport of GPI- anchored proteins from the endoplasmic reticulum to the Golgi.	Phosphatidylinositol glycan anchor biosynthesis class G.	0.823
pgap1	pigk	ENSORLP00000022849	ENSORLP00000004125	GPI inositol-deacylase; Involved in inositol deacylation of GPI-anchored proteins. GPI inositol deacylation may important for efficient transport of GPI- anchored proteins from the endoplasmic reticulum to the Golgi.	GPI-anchor transamidase; Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein. Belongs to the peptidase C13 family.	0.959
pgap1	pigs	ENSORLP00000022849	ENSORLP00000006726	GPI inositol-deacylase; Involved in inositol deacylation of GPI-anchored proteins. GPI inositol deacylation may important for efficient transport of GPI- anchored proteins from the endoplasmic reticulum to the Golgi.	Phosphatidylinositol glycan anchor biosynthesis, class S.	0.949
pgap1	pigt	ENSORLP00000022849	ENSORLP00000006114	GPI inositol-deacylase; Involved in inositol deacylation of GPI-anchored proteins. GPI inositol deacylation may important for efficient transport of GPI- anchored proteins from the endoplasmic reticulum to the Golgi.	Phosphatidylinositol glycan anchor biosynthesis, class T.	0.960