STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pigsPhosphatidylinositol glycan anchor biosynthesis, class S. (562 aa)    
Predicted Functional Partners:
pigk
GPI-anchor transamidase; Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein. Belongs to the peptidase C13 family.
   
 0.999
pigt
Phosphatidylinositol glycan anchor biosynthesis, class T.
   
 0.999
gpaa1
Glycosylphosphatidylinositol anchor attachment 1.
   
 0.999
pigu
Phosphatidylinositol glycan anchor biosynthesis, class U.
   
 0.998
LOC101163952
Uncharacterized protein.
   
 0.967
pigo
Phosphatidylinositol glycan anchor biosynthesis, class O.
   
 0.957
pgap1
GPI inositol-deacylase; Involved in inositol deacylation of GPI-anchored proteins. GPI inositol deacylation may important for efficient transport of GPI- anchored proteins from the endoplasmic reticulum to the Golgi.
    
 0.954
pigf
Phosphatidylinositol glycan anchor biosynthesis, class F.
     
 0.931
pigb
Mannosyltransferase.
    
 
 0.644
pigq
Phosphatidylinositol glycan anchor biosynthesis, class Q.
      
 0.558
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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