STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slc16a9Solute carrier family 16 member 9a. (500 aa)    
Predicted Functional Partners:
LOC101163192
Solute carrier family 22 member 4.
    
 
 0.697
cmbl
Carboxymethylenebutenolidase homolog (Pseudomonas).
   
  
 0.585
emb
Embigin.
   
 0.549
slc25a48
Solute carrier family 25 member 48; Belongs to the mitochondrial carrier (TC 2.A.29) family.
   
  
 0.535
cmtm8
CKLF-like MARVEL transmembrane domain containing 8a.
   
  
 0.518
slc40a1
Solute carrier family 40 protein; May be involved in iron transport and iron homeostasis. Belongs to the ferroportin (FP) (TC 2.A.100) family. SLC40A subfamily.
      
 0.481
MPZL3
Myelin protein zero like 3.
      
 0.478
cgnl1
Cingulin-like 1.
      
 0.461
LOC101156981
Glycerol-3-phosphate acyltransferase 2, mitochondrial.
      
 0.458
ano3
Anoctamin.
      
 0.452
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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