STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
clstn1Calsyntenin 1. (981 aa)    
Predicted Functional Partners:
LOC101172288
Amyloid beta (A4) precursor protein b.
   
 
 0.606
APP
Amyloid beta precursor protein.
   
 
 0.606
klc2
TPR_REGION domain-containing protein.
    
 
 0.515
klc1
Uncharacterized protein.
    
 
 0.515
LOC101171520
TPR_REGION domain-containing protein.
    
 
 0.515
LOC101163426
Kinesin light chain 3.
    
 
 0.515
LOC101165904
Tescalcin b.
      
 0.498
aplp2
Amyloid beta (A4) precursor-like protein 2.
   
 
 0.496
LOC101173205
Hippocalcin.
   
  
 0.490
LOC101165420
Calcium channel, voltage-dependent, gamma subunit 6b.
      
 0.490
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.