Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rnf2Ring finger protein 2. (385 aa)    
Predicted Functional Partners:
PCGF3
Polycomb group ring finger 3.
   
 0.987
LOC101168624
Chromobox homolog 7a.
    
 0.985
LOC101163772
Chromobox homolog 7b.
    
 0.985
pcgf6
Polycomb group ring finger 6.
   
 0.984
pcgf5
Polycomb group ring finger 5a.
   
0.983
eed
Embryonic ectoderm development protein.
    
 0.978
YY1
YY1 transcription factor b.
   
 0.975
H2LSI7_ORYLA
Bmi1 polycomb ring finger oncogene 1a.
   
 0.972
LOC101172611
Chromo domain-containing protein.
    
 0.972
pcgf2
RING-type domain-containing protein.
   
0.971
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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