STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101166999Uncharacterized protein. (254 aa)    
Predicted Functional Partners:
micu1
Mitochondrial calcium uptake 1.
      
 0.673
micu2
Mitochondrial calcium uptake 2.
      
 0.673
LOC101164731
Mitochondrial calcium uptake family, member 3b.
      
 0.558
micu3
Mitochondrial calcium uptake family, member 3a.
      
 0.558
fam32a
Family with sequence similarity 32 member A.
   
  
 0.413
LOC110014938
Single-pass membrane protein with aspartate-rich tail 1b.
      
 0.410
smdt1
Single-pass membrane protein with aspartate-rich tail 1a.
      
 0.410
ENSORLP00000042440
Uncharacterized protein.
      
 0.410
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.