Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101166999Uncharacterized protein. (254 aa)    
Predicted Functional Partners:
ccdc90b
Coiled-coil domain containing 90B.
   
   0.888
micu1
Mitochondrial calcium uptake 1.
      
 0.758
micu2
Mitochondrial calcium uptake 2.
      
 0.756
LOC101164731
Mitochondrial calcium uptake family, member 3b.
      
 0.552
micu3
Mitochondrial calcium uptake family, member 3a.
      
 0.552
slc8b1
Solute carrier family 8 member B1; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family.
      
 0.500
LOC101160267
Mitochondrial calcium uniporter dominant negative beta subunit.
    
 
 0.498
Mcu
Mitochondrial calcium uniporter.
    
 
 0.498
mcub
MCU domain-containing protein.
    
 
 0.498
LOC110014938
Single-pass membrane protein with aspartate-rich tail 1b.
      
 0.419
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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