STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101159508Dedicator of cytokinesis 6; Belongs to the DOCK family. (2029 aa)    
Predicted Functional Partners:
CDC42
Cell division cycle 42.
   
 0.776
LOC101164400
Uncharacterized protein.
   
 0.776
LOC101164658
Uncharacterized protein.
   
 0.677
LOC101174454
Uncharacterized protein.
   
 0.677
polr3k
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
   
  
 0.588
LOC105354647
Uncharacterized protein.
      
 0.560
srm
Spermidine synthase; Belongs to the spermidine/spermine synthase family.
      
 0.546
masp2
Mannan-binding lectin serine peptidase 2.
     
 0.534
LOC105354522
Rac family small GTPase 3b.
   
 0.529
LOC101159016
Uncharacterized protein.
   
 0.529
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.